Actionability Assertions

Gene Condition (MONDO ID) OMIM ID Final Assertion
PRKAR1A N/A (0008057) 160980 Moderate Actionability

Actionability Assertion Rationale

  • The group consensus was to change to a moderate from a strong assertion due to the rarity of the disease, leading to uncertainty in the penetrance and effectiveness evidence.

Actionability Scores

Outcome / Intervention Pair Severity Likelihood Effectiveness Nature of Intervention Total Score
Morbidity and mortality from cardiac myxomas / Cardiac imaging to detect and guide excision of tumors 3 3C 3N 3 12CN
View scoring key
Domain of Actionability Scoring Metric State of the Knowledgebase
Severity: What is the nature of the threat to health to an individual? 3 = Sudden death as a reasonably possible outcome
2 = Reasonable possibility of death or major morbidity
1 = Modest morbidity
0 = Minimal or no morbidity
N/A
Likelihood: What is the chance that the outcome will occur? 3 = >40% chance
2 = 5%-39% chance
1 = 1%-4% chance
0 = <1% chance
A = Substantial evidence or evidence from a high tier (tier 1)
B = Moderate evidence or evidence from a moderate tier (tier 2)
C = Minimal evidence or evidence from a lower tier (tier 3 or 4)
D = Poor evidence or evidence not provided in the report
N = Evidence based on expert contributions (tier 5)
Effectiveness: What is the effectiveness of a specific intervention in preventing or diminishing the risk of harm? 3 = Highly effective
2 = Moderately effective
1 = Minimally effective
0 = Controversial or unknown effectiveness
IN = Ineffective/No interventiona
A = Substantial evidence or evidence from a high tier (tier 1)
B = Moderate evidence or evidence from a moderate tier (tier 2)
C = Minimal evidence or evidence from a lower tier (tier 3 or 4)
D = Poor evidence or evidence not provided in the report
N = Evidence based on expert contributions (tier 5)
Nature of intervention: How risky, medically burdensome, or intensive is the intervention? 3 = Low risk, or medically acceptable and low intensity
2 = Moderate risk, moderately acceptable or intensive
1 = Greater risk, less acceptable and substantial intensity
0 = High risk, poorly acceptable or intensive
N/A
a Do not score the remaining categories

Prevalence of the Genetic Condition

The prevalence of Carney complex (CNC) is unknown. CNC is a rare disease, though more than 700 individuals with CNC are known, including cases from North and South America, Europe, Australia, and Asia.
View Citations

CA Stratakis, et al. (2003) NCBI: NBK1286, Carney complex. Orphanet encyclopedia, ORPHA: 1359., Bertherat J, et al. (2006) PMID: 16756677

Clinical Features (Signs / symptoms)

CNC is associated with skin pigmentary abnormalities, myxomas, endocrine tumors or overactivity, and schwannomas. The most common skin pigmentary abnormality in CNC is pale brown to black lentigines which can appear anywhere on the body including the face, lips, and mucosa. Other skin pigmentary abnormalities include epithelioid-type blue nevi, combined nevi, café au lait macules, and depigmented lesions. Most individuals with CNC have multiple myxomas which can occur on the heart, skin, and breast (typically bilateral). Cardiac myxomas can manifest as obstruction of blood flow, embolic phenomenon, heart failure, and sudden death due to occlusion of a valvular orifice. Other sites for myxomas are the oropharynx, nipple, female genital tract, and bone (usually in nasal sinuses and long bones). Primary pigmented nodular adrenocortical disease (PPNAD) is the most common endocrine tumor, is usually bilateral, and causes Cushing syndrome. Other endocrine tumors include growth hormone (GH)-producing adenoma (acromegaly), large-cell calcifying Sertoli cell tumors (LCCSCTs; often multicenter, bilateral, and typically benign), multiple thyroid nodules (mostly nonfunctioning thyroid follicular adenomas), and ovarian cysts. Thyroid carcinomas, both papillary and follicular, can occur. Papillary carcinoma can be multiple and sometimes quite aggressive. Psammomatous melanotic schwannoma (PMS), a rare tumor of the nerve sheath, may occur anywhere in the central and peripheral nervous system; it is most frequently found in the nerves of the gastrointestinal tract and paraspinal sympathetic chain. Breast ductal adenoma is a benign tumor of the mammary gland ducts and is also seen in CNC.
View Citations

CA Stratakis, et al. (2003) NCBI: NBK1286, Carney complex. Orphanet encyclopedia, ORPHA: 1359., Bertherat J, et al. (2006) PMID: 16756677, Online Medelian Inheritance in Man. (2019) OMIM: 160980

Natural History (Important subgroups & survival / recovery)

Lentigines are the most common presenting feature of CNC and may be present at birth. Typically, they increase in number at puberty, fade after the fourth decade, but may still be evident in the eighth decade. Cutaneous myxomas appear between birth and the fourth decade. Cardiac myxomas may occur at a young age. Breast myxomas occur in females after puberty. Males and females may develop nipple myxomas at any age. In a minority of individuals, PPNAD presents in the first two to three years; in the majority, it presents in the second or third decade. LCCSCT often present in the first decade. Signs and symptoms of CNC may be present at birth, but the median age of diagnosis is 20 years. Most patients with CNC present with a mild increase in GH. However, clinically evident acromegaly is a relatively frequent manifestation of CNC, occurring in approximately 10% of adults at the time of presentation. Most individuals with CNC have a normal life span. However, because some die at an early age, the average life expectancy for individuals with CNC is 50 years. Causes of death include complications of cardiac myxoma (myxoma emboli, cardiomyopathy, cardiac arrhythmia, and surgical intervention), metastatic or intracranial PMS, thyroid carcinoma, and metastatic pancreatic and testicular tumors.
View Citations

CA Stratakis, et al. (2003) NCBI: NBK1286, Bertherat J, et al. (2006) PMID: 16756677

Description of sources of evidence:

Tier 1: Evidence from a systematic review or a meta-analysis or clinical practice guideline clearly based on a systematic review.
Tier 2: Evidence from clinical practice guidelines or broad-based expert consensus with non-systematic evidence review.
Tier 3: Evidence from another source with non-systematic review of evidence with primary literature cited.
Tier 4: Evidence from another source with non-systematic review of evidence with no citations to primary data sources.
Tier 5: Evidence from a non-systematically identified source.

Mode of Inheritance

Autosomal Dominant
View Citations

CA Stratakis, et al. (2003) NCBI: NBK1286, Carney complex. Orphanet encyclopedia, ORPHA: 1359., Bertherat J, et al. (2006) PMID: 16756677, Online Medelian Inheritance in Man. (2019) OMIM: 160980

Prevalence of Genetic Variants

Unknown
The frequency of PRKAR1A pathogenic variants in the general population was not identified.
Unknown
About 70% of cases of CNC are found to have a variant in PRKAR1A. The frequency of PRKAR1A pathogenic variants is higher in patients with Cushing syndrome, about 80%.
Tier 3 View Citations

CA Stratakis, et al. (2003) NCBI: NBK1286

Penetrance (Includes any high-risk racial or ethnic subgroups)

>= 40 %
The overall penetrance of CNC in those with a PRKAR1A pathogenic variant is greater than 95% by age 50 years.
Tier 4 View Citations

CA Stratakis, et al. (2003) NCBI: NBK1286

>= 40 %
Estimated frequencies of the main features of CNC are listed below:

• PPNAD: 25-60%

• Cushing syndrome due to PPNAD: 25-30%

• Cardiac myxoma: 30-60%

• Skin myxoma: 20-63%

• Lentiginosis: 60-70%

• Breast ductal adenoma: 25%

• LCCSCT (in males): 33-56%

• Ovarian cyst (in females): 20-67%

• Acromegaly: 10%

• Thyroid tumor: 10-25%

• Melanotic schwannoma: 8-18%

• Osteochondromyxoma: <10%.

Tier 3 View Citations

Bertherat J, et al. (2006) PMID: 16756677

>= 40 %
Though clinically evident acromegaly is evident in approximately 10% of adults at the time of presentation, asymptomatic increased serum concentration of GH and insulin-like growth factor type-1 (IGF-1), as well as subtle hyperprolactinemia, may be present in up to 75% of individuals with CNC.
Tier 4 View Citations

CA Stratakis, et al. (2003) NCBI: NBK1286

Expressivity

The manifestations of CNC vary greatly among patients. Even in the same kindred, phenotypic variability can be observed.
Tier 4 View Citations

Bertherat J, et al. (2006) PMID: 16756677

Description of sources of evidence:

Tier 1: Evidence from a systematic review or a meta-analysis or clinical practice guideline clearly based on a systematic review.
Tier 2: Evidence from clinical practice guidelines or broad-based expert consensus with non-systematic evidence review.
Tier 3: Evidence from another source with non-systematic review of evidence with primary literature cited.
Tier 4: Evidence from another source with non-systematic review of evidence with no citations to primary data sources.
Tier 5: Evidence from a non-systematically identified source.

Patient Management

To establish the extent of disease and needs in an individual diagnosed with CNC, the following evaluations are recommended:

• Imaging or biochemical screening for endocrine tumors.

• Thyroid ultrasonography is recommended as a satisfactory, cost-effective method for determining thyroid involvement in pediatric and young adults with CNC. Its value, however, is questionable in older individuals.

• In males, testicular ultrasonography.

• In females, transabdominal ultrasonography.

Tier 4 View Citations

CA Stratakis, et al. (2003) NCBI: NBK1286

The only preventive measure in an asymptomatic individual is surgical removal of a heart tumor (cardiac myxoma) prior to the development of heart dysfunction, stroke, or other embolism. Cardiac myxomas should be diagnosed early through regular screening.
Tier 4 View Citations

CA Stratakis, et al. (2003) NCBI: NBK1286, Carney complex. Orphanet encyclopedia, ORPHA: 1359., Bertherat J, et al. (2006) PMID: 16756677

Patients with CNC who have cardiac myxomas have an increased chance of sudden death. This risk justifies frequent clinic visits with serial surveillance. Detection of a cardiac myxoma via surveillance prompts surgical excision. Combining sporadic and familial cases, there is 81-96% long-term survival rate after surgical resection. However, this data does not account for multiple resections which are common for CNC given the risk for recurrence of cardiac myxomas, around 10-21%. There is little evidence as to how many cardiac operations one patient may experience in a lifetime.
Tier 5 View Citations

Siordia JA, et al. (2015) PMID: 25996461

Development of metabolic abnormalities from Cushing syndrome or arthropathy and other complications from acromegaly may be prevented by medical or surgical treatment of the respective endocrine manifestations.
Tier 4 View Citations

CA Stratakis, et al. (2003) NCBI: NBK1286, Bertherat J, et al. (2006) PMID: 16756677

Surveillance

It is recommended that patients with CNC have lifelong follow-up tests for cardiac myxoma and other associated disease (testicular tumors, acromegaly, and thyroid lesions).
Tier 2 View Citations

Nieman LK, et al. (2015) PMID: 26222757

Recommended clinical surveillance in prepubertal pediatric individuals with CNC include:

• Cardiac myxoma surveillance, though guidelines differ on suggested modality (echocardiogram or ultrasound) and frequency (every 6 months to annually)

• Close monitoring of growth rate and pubertal staging which includes biological and hormonal work-up and imaging (annually or dependent on prior findings).

Tier 4 View Citations

CA Stratakis, et al. (2003) NCBI: NBK1286, Bertherat J, et al. (2006) PMID: 16756677

Recommended clinical surveillance in postpubertal pediatric and adult individuals with CNC include:

• Cardiac myxoma surveillance, though guidelines differ on suggested modality (echocardiogram or ultrasound) and frequency (every 6 months to annually)

• Testicular ultrasound (annually)

• Urinary free cortisol levels (annually)

• Serum IGF-1 levels (annually).

Tier 4 View Citations

CA Stratakis, et al. (2003) NCBI: NBK1286, Bertherat J, et al. (2006) PMID: 16756677

Description of sources of evidence:

Tier 1: Evidence from a systematic review or a meta-analysis or clinical practice guideline clearly based on a systematic review.
Tier 2: Evidence from clinical practice guidelines or broad-based expert consensus with non-systematic evidence review.
Tier 3: Evidence from another source with non-systematic review of evidence with primary literature cited.
Tier 4: Evidence from another source with non-systematic review of evidence with no citations to primary data sources.
Tier 5: Evidence from a non-systematically identified source.

Nature of Intervention

The interventions described in this report include multiple and frequent surveillance recommendations and surgical removal of cardiac myxomas. Perioperative mortality in the surgical resection of cardiac myxomas is rare. Perioperative complications occasionally involve strokes from embolization during the procedure. Acute postoperative complications involve atrial fibrillation, embolic strokes, and decreased cardiac output. Twenty-six percent of patients develop postoperative supraventricular arrhythmias, but they are easily managed with appropriate medications and are typically discharged in sinus rhythm. Long-term postoperative complications tend to arise from congestive heart failure and myocardial infarction. Multiple cardiac surgeries may cause cardiac dysfunction due to repeated periods of ischemic arrest.
Context: Adult Pediatric
View Citations

CA Stratakis, et al. (2003) NCBI: NBK1286, Bertherat J, et al. (2006) PMID: 16756677, Siordia JA, et al. (2015) PMID: 25996461

Chance to Escape Clinical Detection

Cardiac myxoma may be the cause of the high rate (16%) of sudden death historically reported in CNC families, thus underlying the importance of its early diagnosis. Diagnosis of Cushing syndrome due to PPNAD is often difficult because hypercortisolism can develop progressively over years.
Context: Adult Pediatric
Tier 4 View Citations

Bertherat J, et al. (2006) PMID: 16756677

Description of sources of evidence:

Tier 1: Evidence from a systematic review or a meta-analysis or clinical practice guideline clearly based on a systematic review.
Tier 2: Evidence from clinical practice guidelines or broad-based expert consensus with non-systematic evidence review.
Tier 3: Evidence from another source with non-systematic review of evidence with primary literature cited.
Tier 4: Evidence from another source with non-systematic review of evidence with no citations to primary data sources.
Tier 5: Evidence from a non-systematically identified source.
Gene Condition Associations
OMIM Identifier Primary MONDO Identifier Additional MONDO Identifiers
PRKAR1A 160980 0008057 0015285

References List

Bertherat J. (2006) Carney complex (CNC). Orphanet journal of rare diseases. 1(1750-1172):21.

CA Stratakis, M Raygada. Carney Complex. (2003) [Updated Aug 16 2018]. In: MP Adam, HH Ardinger, RA Pagon, et al., editors. GeneReviews® [Internet]. Seattle (WA): University of Washington, Seattle; 1993-2026. Available from: https://www.ncbi.nlm.nih.gov/books/NBK1286/

CARNEY COMPLEX, TYPE 1; CNC1. Online Medelian Inheritance in Man, OMIM®. Johns Hopkins University, Baltimore, MD. MIM: 160980, (2019) World Wide Web URL: http://omim.org/

Nieman LK, Biller BM, Findling JW, Murad MH, Newell-Price J, Savage MO, Tabarin A. (2015) Treatment of Cushing's Syndrome: An Endocrine Society Clinical Practice Guideline. The Journal of clinical endocrinology and metabolism. 100(8):2807-31.

Siordia JA. (2015) Medical and Surgical Management of Carney Complex. Journal of cardiac surgery. 30(7):560-7.

Early Rule-Out Summary

This topic passed the early rule out stage

Findings of Early Rule-Out Assessment

  1. Is there a qualifying resource, such as a practice guideline or systematic review, for the genetic condition?
  2. Does the practice guideline or systematic review indicate that the result is actionable in one or more of the following ways?
  3. a. Patient Management

    b. Surveillance or Screening

    c. Circumstances to Avoid

  4. Is it actionable in an undiagnosed adult with the condition?
  5. Is this condition an important health problem?
  6. Is there at least on known pathogenic variant with at least moderate penetrance (≥40%) or moderate relative risk (≥2) in any population?